1MG8 NMR structure of ubiquitin-like domain in murine Parkin date
authors Tashiro, M., Okubo, S., Shimotakahara, S., Hatanaka, H., Yasuda, H., Kainosho, M., Yokoyama, S., Shindo, H., RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 10 Modelsresolution
related structures by homologous chain: 1IYF
Primary referenceNMR structure of ubiquitin-like domain in PARKIN: gene product of familial Parkinson's disease., Tashiro M, Okubo S, Shimotakahara S, Hatanaka H, Yasuda H, Kainosho M, Yokoyama S, Shindo H, J Biomol NMR 2003 Feb;25(2):153-6. PMID:12652124
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (1mg8.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1MG8
  • Original NMR restraints for 1MG8 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1MG8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MG8 from S2C, [Save to disk]
  • View 1MG8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MG8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MG8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mg8a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mg8_A] [1mg8]
  • SWISS-PROT database: [Q9WVS6]
  • Domain organization of [PRKN2_MOUSE] by SWISSPFAM
  • Domain found in 1MG8: [UBQ ] by SMART
  • Other resources with information on 1MG8
  • Community annotation for 1MG8 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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