1MJ4 Oxidoreductase date Aug 26, 2002
title Crystal Structure Analysis Of The Cytochrome B5 Domain Of Hu Sulfite Oxidase
authors M.J.Rudolph, J.L.Johnson, K.V.Rajagopalan, C.Kisker
compound source
Molecule: Sulfite Oxidase
Chain: A
Fragment: Cytochrome B5 Domain, Residues 22-103 Of Sws P516
Ec: 1.8.3.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.118 R_Free 0.139
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.899 35.447 26.263 90.00 93.78 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand GOL, HEM, SO4 enzyme Oxidoreductase E.C.1.8.3.1 BRENDA
note 1MJ4 is a representative structure
related structures by homologous chain: 1SOX
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe 1.2 A structure of the human sulfite oxidase cytochrome b(5) domain., Rudolph MJ, Johnson JL, Rajagopalan KV, Kisker C, Acta Crystallogr D Biol Crystallogr 2003 Jul;59(Pt 7):1183-91. PMID:12832761
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1mj4.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 1MJ4
  • CSU: Contacts of Structural Units for 1MJ4
  • Likely Quarternary Molecular Structure file(s) for 1MJ4
  • Retrieve 1MJ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MJ4 from S2C, [Save to disk]
  • View 1MJ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MJ4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1MJ4 from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MJ4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mj4a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1mj4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mj4] [1mj4_A]
  • SWISS-PROT database: [P51687]
  • Domain organization of [SUOX_HUMAN] by SWISSPFAM
  • Domain found in 1MJ4: [Cyt-b5 ] by SMART
  • Other resources with information on 1MJ4
  • Community annotation for 1MJ4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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