1MP8 Transferase date Sep 11, 2002
title Crystal Structure Of Focal Adhesion Kinase (Fak)
authors J.Nowakowski, C.N.Cronin, D.E.Mcree, M.W.Knuth, C.G.Nelson, N.P.Pavletich, J.Rodgers, B.C.Sang, D.N.Scheibe, R.V.Swanson, D.A.Thompson
compound source
Molecule: Focal Adhesion Kinase 1
Chain: A
Fragment: Kinase Domain
Synonym: Fak, Fadk 1, Pp125fak, Protein-Tyrosine Kinase 2
Ec: 2.7.1.112
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fak
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Hi 5
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.189 46.636 62.225 90.00 80.57 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand ADP enzyme Transferase E.C.2.7.1.112 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of the cancer-related Aurora-A, FAK, and EphA2 protein kinases from nanovolume crystallography., Nowakowski J, Cronin CN, McRee DE, Knuth MW, Nelson CG, Pavletich NP, Rogers J, Sang BC, Scheibe DN, Swanson RV, Thompson DA, Structure (Camb) 2002 Dec;10(12):1659-67. PMID:12467573
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1mp8.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 1MP8
  • CSU: Contacts of Structural Units for 1MP8
  • Likely Quarternary Molecular Structure file(s) for 1MP8
  • Retrieve 1MP8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MP8 from S2C, [Save to disk]
  • View 1MP8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MP8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MP8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mp8a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1mp8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mp8_A] [1mp8]
  • SWISS-PROT database: [Q05397]
  • Domain organization of [FAK1_HUMAN] by SWISSPFAM
  • Domain found in 1MP8: [TyrKc ] by SMART
  • Other resources with information on 1MP8
  • Community annotation for 1MP8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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