1MQB Transferase date Sep 16, 2002
title Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase
authors J.Nowakowski, C.N.Cronin, D.E.Mcree, M.W.Knuth, C.Nelson, N.Pavletich, J.Rogers, B.C.Sang, D.N.Scheibe, R.V.Swanson, D.A.Thompson
compound source
Molecule: Ephrin Type-A Receptor 2
Chain: A, B
Fragment: Kinase Domain
Synonym: Epha2 Receptor Tyrosine Kinase, Tyrosine-Protein Kinase Receptor Eck, Epithelial Cell Kinase;
Ec: 2.7.1.112
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epha2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Hi5
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 32 2 1
R_factor 0.236 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.127 72.127 241.623 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand ANP enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1JPA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructures of the cancer-related Aurora-A, FAK, and EphA2 protein kinases from nanovolume crystallography., Nowakowski J, Cronin CN, McRee DE, Knuth MW, Nelson CG, Pavletich NP, Rogers J, Sang BC, Scheibe DN, Swanson RV, Thompson DA, Structure (Camb) 2002 Dec;10(12):1659-67. PMID:12467573
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (1mqb.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (1mqb.pdb2.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 1MQB
  • CSU: Contacts of Structural Units for 1MQB
  • Likely Quarternary Molecular Structure file(s) for 1MQB
  • Retrieve 1MQB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MQB from S2C, [Save to disk]
  • View 1MQB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MQB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MQB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mqba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1mqbb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1mqb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mqb] [1mqb_A] [1mqb_B]
  • SWISS-PROT database: [P29317]
  • Domain organization of [EPHA2_HUMAN] by SWISSPFAM
  • Domain found in 1MQB: [TyrKc ] by SMART
  • Other resources with information on 1MQB
  • Community annotation for 1MQB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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