1MV9 Transcription date Sep 24, 2002
title Crystal Structure Of The Human Rxr Alpha Ligand Binding Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic Acid) And A Coactivator Peptide
authors P.F.Egea, A.Mitschler, D.Moras
compound source
Molecule: Rxr Retinoid X Receptor
Chain: A
Fragment: Ligand Binding Domain(Residues 223-462)
Synonym: Retinoic Acid Receptor Rxr-Alpha
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b

Molecule: Nuclear Receptor Coactivator 2
Chain: B
Fragment: Nr Box
Synonym: Grip1
Engineered: Yes

Synthetic: Yes
Other_details: A Synthetic Peptide Of A Coactivator Protein
symmetry Space Group: P 43 21 2
R_factor 0.201 R_Free 0.249
length a length b length c angle alpha angle beta angle gamma
64.361 64.361 112.740 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand HXA enzyme
related structures by homologous chain: 1MVC, 1MZN

Primary referenceMolecular recognition of agonist ligands by RXRs., Egea PF, Mitschler A, Moras D, Mol Endocrinol 2002 May;16(5):987-97. PMID:11981034
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1mv9.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 1MV9
  • CSU: Contacts of Structural Units for 1MV9
  • Likely Quarternary Molecular Structure file(s) for 1MV9
  • Retrieve 1MV9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MV9 from S2C, [Save to disk]
  • View 1MV9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MV9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MV9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mv9a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1mv9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mv9_B] [1mv9] [1mv9_A]
  • SWISS-PROT database: [Q15596] [P19793]
  • Domain organization of [NCOA2_HUMAN] [RXRA_HUMAN] by SWISSPFAM
  • Domain found in 1MV9: [HOLI ] by SMART
  • Other resources with information on 1MV9
  • Community annotation for 1MV9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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