1MZN Transcription date Oct 09, 2002
title Crystal Structure At 1.9 Angstroems Resolution Of The Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound To The Synthetic Agonist Compound Bms 649 And A Coactivator Peptide
authors P.F.Egea, A.Mitschler, D.Moras
compound source
Molecule: Rxr Retinoid X Receptor
Chain: A, C, E, G
Fragment: Ligand Binding Domain(Residues 223-462)
Synonym: Retinoic Acid Receptor Rxr-Alpha
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b

Molecule: Nuclear Receptor Coactivator 2
Chain: B, D, F, H
Fragment: Nr Box
Synonym: Grip1
Engineered: Yes

Synthetic: Yes
Other_details: Chemical Synthesis, This Is The Synthetic Peptide Fragment From Grip-1 Coactivator
symmetry Space Group: P 1
R_factor 0.195 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.119 64.694 94.784 109.97 92.87 89.99
method X-Ray Diffractionresolution 1.90 Å
ligand BM6 BindingDB enzyme
related structures by homologous chain: 1MV9
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E


Primary referenceMolecular recognition of agonist ligands by RXRs., Egea PF, Mitschler A, Moras D, Mol Endocrinol 2002 May;16(5):987-97. PMID:11981034
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (1mzn.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (1mzn.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 1MZN
  • CSU: Contacts of Structural Units for 1MZN
  • Likely Quarternary Molecular Structure file(s) for 1MZN
  • Retrieve 1MZN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MZN from S2C, [Save to disk]
  • View 1MZN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MZN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MZN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mzna_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1mznc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1mzne_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1mzng_, region G [Jmol] [rasmolscript] [script source]
  • Fold representative 1mzn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mzn_E] [1mzn_H] [1mzn] [1mzn_D] [1mzn_F] [1mzn_B] [1mzn_A] [1mzn_G] [1mzn_C]
  • SWISS-PROT database: [Q15596] [P19793]
  • Domain organization of [NCOA2_HUMAN] [RXRA_HUMAN] by SWISSPFAM
  • Domain found in 1MZN: [HOLI ] by SMART
  • Other resources with information on 1MZN
  • Community annotation for 1MZN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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