1N1A Isomerase date Oct 16, 2002
title Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
authors P.Li, Y.Ding, B.Wu, C.Shu, B.Shen, Z.Rao
compound source
Molecule: Fkbp52
Chain: A, B
Fragment: The N-Terminal Fragment (1-140)
Synonym: Fk506-Binding Protein 4
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fkbp4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a(+)
symmetry Space Group: P 1 21 1
R_factor 0.204 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.805 58.362 70.904 90.00 98.31 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
related structures by homologous chain: 1KT0, 1Q1C
Primary referenceStructure of the N-terminal domain of human FKBP52., Li P, Ding Y, Wu B, Shu C, Shen B, Rao Z, Acta Crystallogr D Biol Crystallogr 2003 Jan;59(Pt 1):16-22. PMID:12499534
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1n1a.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 1N1A
  • Likely Quarternary Molecular Structure file(s) for 1N1A
  • Structure Factors (81 Kb)
  • Retrieve 1N1A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N1A from S2C, [Save to disk]
  • Re-refined 1n1a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1N1A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N1A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1N1A, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n1aa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1n1ab_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1n1a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n1a_B] [1n1a] [1n1a_A]
  • SWISS-PROT database: [Q02790]
  • Domain organization of [FKBP4_HUMAN] by SWISSPFAM
  • Other resources with information on 1N1A
  • Community annotation for 1N1A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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