1Q1C Isomerase date Jul 18, 2003
title Crystal Structure Of N(1-260) Of Human Fkbp52
authors B.Wu, P.Li, Z.Lou, Y.Ding, C.Shu, B.Shen, Z.Rao
compound source
Molecule: Fk506-Binding Protein 4
Chain: A
Fragment: Residues (-19)-260
Synonym: Peptidyl-Prolyl Cis-Trans Isomerase, Ppiase, Rotamase, P59 Protein, Hsp Binding Immunophilin, Hbi, Fkbp52 Protein, 52 Kda Fk506 Binding Protein, Fkbp59, N(1- 260) Of Fkbp52;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.247
length a length b length c angle alpha angle beta angle gamma
48.829 42.218 79.065 90.00 102.25 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand DMS, EDO enzyme Isomerase E.C. BRENDA
related structures by homologous chain: 1N1A, 1P5Q, 1R9H
Primary reference3D structure of human FK506-binding protein 52: implications for the assembly of the glucocorticoid receptor/Hsp90/immunophilin heterocomplex., Wu B, Li P, Liu Y, Lou Z, Ding Y, Shu C, Ye S, Bartlam M, Shen B, Rao Z, Proc Natl Acad Sci U S A 2004 Jun 1;101(22):8348-53. Epub 2004 May 24. PMID:15159550
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (1q1c.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1Q1C
  • CSU: Contacts of Structural Units for 1Q1C
  • Likely Quarternary Molecular Structure file(s) for 1Q1C
  • Structure Factors (381 Kb)
  • Retrieve 1Q1C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q1C from S2C, [Save to disk]
  • Re-refined 1q1c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Q1C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Q1C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Q1C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q1ca2, region A:141-257 [Jmol] [rasmolscript] [script source]
        - Domain d1q1ca1, region A:21-140 [Jmol] [rasmolscript] [script source]
  • Fold representative 1q1c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q1c_A] [1q1c]
  • SWISS-PROT database: [Q02790]
  • Domain organization of [FKBP4_HUMAN] by SWISSPFAM
  • Other resources with information on 1Q1C
  • Community annotation for 1Q1C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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