1N38 Transferase Rna date Oct 25, 2002
title Reovirus Polymerase Lambda3 Elongation Complex With One Phosphodiester Bond Formed
authors Y.Tao, D.L.Farsetta, M.L.Nibert, S.C.Harrison
compound source
Molecule: 5'-R(Pgpc)-3'
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: 5'-R(Apupupapgpc)-3'
Chain: C
Engineered: Yes

Synthetic: Yes
Other_details: Auuagc, Ordered From Dharmacon

Molecule: Minor Core Protein Lambda 3
Chain: A
Synonym: Lambda3
Engineered: Yes

Organism_scientific: Mammalian Orthoreovirus 3
Organism_taxid: 10886
Strain: Dearing
Gene: L1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf21
Expression_system_vector_type: Baculovirus Acnpv
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.263
length a length b length c angle alpha angle beta angle gamma
70.719 85.207 248.473 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CH1, MN, U3H enzyme
related structures by homologous chain: 1MWH, 1N1H
  • RNA-directed 5'-3' RNA polym...

  • Primary referenceRNA synthesis in a cage--structural studies of reovirus polymerase lambda3., Tao Y, Farsetta DL, Nibert ML, Harrison SC, Cell 2002 Nov 27;111(5):733-45. PMID:12464184
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (218 Kb) [Save to disk]
  • Biological Unit Coordinates (1n38.pdb1.gz) 213 Kb
  • LPC: Ligand-Protein Contacts for 1N38
  • CSU: Contacts of Structural Units for 1N38
  • Likely Quarternary Molecular Structure file(s) for 1N38
  • Structure Factors (364 Kb)
  • Retrieve 1N38 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N38 from S2C, [Save to disk]
  • Re-refined 1n38 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1N38 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N38
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1N38, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n38a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1n38 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n38_A] [1n38_B] [1n38] [1n38_C]
  • SWISS-PROT database: [P17378]
  • Domain organization of [RDRP_REOVD] by SWISSPFAM
  • Other resources with information on 1N38
  • Community annotation for 1N38 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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