1N4V ATOMIC RESOLUTION STRUCTURE OF CHOLESTEROL OXIDASE @pH 5.8 (STREPTOMYCES SP. SA-COO) date
authors Vrielink, A., Lario, P.I.
compound source
symmetry
R_factor
R_Free 0.1468
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.00
ligand FAD, GOL enzyme
related structures by homologous chain: 1B4V, 1N4U
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAtomic resolution crystallography reveals how changes in pH shape the protein microenvironment., Lyubimov AY, Lario PI, Moustafa I, Vrielink A, Nat Chem Biol. 2006 May;2(5):259-64. Epub 2006 Apr 9. PMID:16604066
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (293 Kb) [Save to disk]
  • Biological Unit Coordinates (1n4v.pdb1.gz) 288 Kb
  • LPC: Ligand-Protein Contacts for 1N4V
  • CSU: Contacts of Structural Units for 1N4V
  • Likely Quarternary Molecular Structure file(s) for 1N4V
  • Retrieve 1N4V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N4V from S2C, [Save to disk]
  • View 1N4V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N4V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1N4V from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1N4V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n4va2, region A:319-450 [Jmol] [rasmolscript] [script source]
        - Domain d1n4va1, region A:9-318,A:451-507 [Jmol] [rasmolscript] [script source]
  • Fold representative 1n4v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n4v] [1n4v_A]
  • SWISS-PROT database: [P12676]
  • Domain organization of [CHOD_STRS0] by SWISSPFAM
  • Other resources with information on 1N4V
  • Community annotation for 1N4V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science