1NDE Transcription date Dec 09, 2002
title Estrogen Receptor Beta With Selective Triazine Modulator
authors B.R.Henke, T.G.Consler, N.Go, R.L.Hale, D.R.Hohman, S.A.Jones, A.T L.B.Moore, J.T.Moore, L.A.Orband-Miller, R.G.Robinett, J.Sheari P.K.Spearing, E.L.Stewart, P.S.Turnbull, S.L.Weaver, S.P.Willia G.B.Wisely, M.H.Lambert
compound source
Molecule: Estrogen Receptor Beta
Chain: A
Fragment: Residues 256-501
Synonym: Er-Beta
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Estrb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21[De3]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Perb256-501
symmetry Space Group: P 61 2 2
R_factor 0.240 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.558 65.558 239.300 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand MON BindingDB enzyme
related structures by homologous chain: 1L2J
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA new series of estrogen receptor modulators that display selectivity for estrogen receptor beta., Henke BR, Consler TG, Go N, Hale RL, Hohman DR, Jones SA, Lu AT, Moore LB, Moore JT, Orband-Miller LA, Robinett RG, Shearin J, Spearing PK, Stewart EL, Turnbull PS, Weaver SL, Williams SP, Wisely GB, Lambert MH, J Med Chem 2002 Dec 5;45(25):5492-505. PMID:12459017
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1nde.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (1nde.pdb2.gz) 75 Kb
  • Biological Unit Coordinates (1nde.pdb3.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 1NDE
  • CSU: Contacts of Structural Units for 1NDE
  • Likely Quarternary Molecular Structure file(s) for 1NDE
  • Structure Factors (98 Kb)
  • Retrieve 1NDE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NDE from S2C, [Save to disk]
  • Re-refined 1nde structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NDE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NDE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NDE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ndea_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1nde from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nde] [1nde_A]
  • SWISS-PROT database: [Q92731]
  • Domain organization of [ESR2_HUMAN] by SWISSPFAM
  • Domain found in 1NDE: [HOLI ] by SMART
  • Alignments of the sequence of 1NDE with the sequences similar proteins can be viewed for 1NDE's classification [ESR2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ESR2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1NDE
  • Community annotation for 1NDE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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