1NE6 Hydrolase date Dec 10, 2002
title Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-Dep Protein Kinase
authors J.Wu, J.M.Jones, N.H.Xuong, S.S.Taylor
compound source
Molecule: Camp-Dependent Protein Kinase Type I-Alpha Regula Chain;
Chain: A
Fragment: 1-91 Deletion Mutant
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Gene: Prkar1a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.211 R_Free 0.241
length a length b length c angle alpha angle beta angle gamma
87.400 87.400 178.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand SP1 enzyme
related structures by homologous chain: 1NE4, 1U7E

Primary referenceCrystal Structures of RIalpha Subunit of Cyclic Adenosine 5'-Monophosphate (cAMP)-Dependent Protein Kinase Complexed with (R(p))-Adenosine 3',5'-Cyclic Monophosphothioate and (S(p))-Adenosine 3',5'-Cyclic Monophosphothioate, the Phosphothioate Analogues of cAMP(,)., Wu J, Jones JM, Xuong NH, Eyck LF, Taylor SS, Biochemistry 2004 Jun 1;43(21):6620-6629. PMID:15157095
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1ne6.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 1NE6
  • CSU: Contacts of Structural Units for 1NE6
  • Likely Quarternary Molecular Structure file(s) for 1NE6
  • Structure Factors (276 Kb)
  • Retrieve 1NE6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NE6 from S2C, [Save to disk]
  • Re-refined 1ne6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NE6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NE6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NE6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ne6a1, region A:109-244 [Jmol] [rasmolscript] [script source]
        - Domain d1ne6a2, region A:245-376 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ne6] [1ne6_A]
  • SWISS-PROT database: [P00514]
  • Domain organization of [KAP0_BOVIN] by SWISSPFAM
  • Domain found in 1NE6: [cNMP ] by SMART
  • Other resources with information on 1NE6
  • Community annotation for 1NE6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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