1NE7	Hydrolase	date	Dec 10, 2002
title	Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75 A Complexed With N-Acetyl-Glucosamine-6-Phosphate And 2-Deoxy Glucitol-6-Phosphate
authors	R.Arreola, B.Valderrama, M.L.Morante, E.Horjales
compound		source
Molecule: Glucosamine-6-Phosphate Isomerase Chain: A, B, C, D, E, F Synonym: Glucosamine-6-Phosphate Deaminase, Gnpda, Glcn6p D Oscillin; Ec: 3.5.99.6 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gnpi Or Hln Or Kiaa0060 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free 0.217
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.877 110.892 180.881 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	16G, AGP, GLC, SO4	enzyme	Hydrolase E.C.3.5.99.6 BRENDA
note	1NE7 supersedes 1D9T
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Two mammalian glucosamine-6-phosphate deaminases: a structural and genetic study., Arreola R, Valderrama B, Morante ML, Horjales E, FEBS Lett 2003 Sep 11;551(1-3):63-70. PMID:12965206

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (319 Kb) [Save to disk] Biological Unit Coordinates (1ne7.pdb1.gz) 311 Kb LPC: Ligand-Protein Contacts for 1NE7 CSU: Contacts of Structural Units for 1NE7 Likely Quarternary Molecular Structure file(s) for 1NE7 Structure Factors (2369 Kb) Retrieve 1NE7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NE7 from S2C, [Save to disk] Re-refined 1ne7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1NE7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NE7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1NE7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ne7a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ne7b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1ne7c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1ne7d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1ne7e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1ne7f_, region F [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ne7_C] [1ne7] [1ne7_B] [1ne7_A] [1ne7_E] [1ne7_D] [1ne7_F] SWISS-PROT database: [P46926] Domain organization of [GNPI1_HUMAN] by SWISSPFAM

Other resources with information on 1NE7

Community annotation for 1NE7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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