1NFA Transcription Regulation date Jan 18, 1997
title Human Transcription Factor Nfatc Dna Binding Domain, Nmr, 10 Structures
authors S.A.Wolfe, P.Zhou, V.Dotsch, L.Chen, A.You, S.N.Ho, G.R.Crabtree, G.Wagner, G.L.Verdine
compound source
Molecule: Human Transcription Factor Nfatc1
Chain: A
Fragment: Dna-Binding Domain, Residues 416 - 591
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bl21
Cellular_location: Cytoplasm Until Dephosphorylated
Gene: Nfatc1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_vector_type: Bacterial
Expression_system_plasmid: Plm1
Expression_system_gene: Nfatc1
methodSolution NMR
related structures by homologous chain: 1A66, 1OWR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUnusual Rel-like architecture in the DNA-binding domain of the transcription factor NFATc., Wolfe SA, Zhou P, Dotsch V, Chen L, You A, Ho SN, Crabtree GR, Wagner G, Verdine GL, Nature 1997 Jan 9;385(6612):172-6. PMID:8990122
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (486 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1NFA
  • Original NMR restraints for 1NFA from PDB
  • Retrieve 1NFA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NFA from S2C, [Save to disk]
  • View 1NFA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NFA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NFA, from MSDmotif at EBI
  • Genome occurence of 1NFA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nfa__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1nfa from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nfa_A] [1nfa]
  • SWISS-PROT database: [O95644]
  • Domain organization of [NFAC1_HUMAN] by SWISSPFAM
  • Other resources with information on 1NFA
  • Community annotation for 1NFA at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1NFA from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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