1NLW Transcription Dna date Jan 07, 2003
title Crystal Structure Of Mad-Max Recognizing Dna
authors S.K.Nair, S.K.Burley
compound source
Molecule: 5'-D(Gpapgptpapgpcpapcpgptpgpcptpa -3';
Chain: F, G, H, J
Engineered: Yes
Synthetic: Yes

Molecule: Mad Protein
Chain: A, D
Fragment: Bhlhz Region
Synonym: Max Dimerizer
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mad
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet

Molecule: Max Protein
Chain: B, E
Fragment: Bhlhz Region
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Max
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet 3
symmetry Space Group: P 1
R_factor 0.264 R_Free 0.324
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.346 56.020 65.602 88.82 79.08 67.11
method X-Ray Diffractionresolution 2.00 Å
related structures by homologous chain: 1HLO, 1NKP
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


Primary referenceX-ray structures of Myc-Max and Mad-Max recognizing DNA. Molecular bases of regulation by proto-oncogenic transcription factors., Nair SK, Burley SK, Cell 2003 Jan 24;112(2):193-205. PMID:12553908
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1nlw.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (1nlw.pdb2.gz) 41 Kb
  • CSU: Contacts of Structural Units for 1NLW
  • Likely Quarternary Molecular Structure file(s) for 1NLW
  • Retrieve 1NLW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NLW from S2C, [Save to disk]
  • View 1NLW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NLW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NLW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nlwa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1nlwb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1nlwd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1nlwe_, region E [Jmol] [rasmolscript] [script source]
  • Fold representative 1nlw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nlw_H] [1nlw_F] [1nlw_E] [1nlw_B] [1nlw] [1nlw_A] [1nlw_D] [1nlw_J] [1nlw_G]
  • SWISS-PROT database: [Q05195] [P61244]
  • Domain organization of [MAD1_HUMAN] [MAX_HUMAN] by SWISSPFAM
  • Domain found in 1NLW: [HLH ] by SMART
  • Other resources with information on 1NLW
  • Community annotation for 1NLW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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