1NKP Transcription Dna date Jan 03, 2003
title Crystal Structure Of Myc-Max Recognizing Dna
authors S.K.Nair, S.K.Burley
compound source
Molecule: 5'- D(Cpgpapgptpapgpcpapcpgptpgpcptpapcptpc) -3';
Chain: F, G, H, J
Engineered: Yes
Synthetic: Yes

Molecule: Myc Proto-Oncogene Protein
Chain: A, D
Fragment: Bhlhz Region
Synonym: C-Myc
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myc
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet

Molecule: Max Protein
Chain: B, E
Fragment: Bhlhz Region
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Max
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet 3
symmetry Space Group: P 1
R_factor 0.219 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.244 45.128 86.484 87.91 84.61 71.50
method X-Ray Diffractionresolution 1.80 Å
note 1NKP (Molecule of the Month:pdb112)
related structures by homologous chain: 1NLW, 2A93
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


Primary referenceX-ray structures of Myc-Max and Mad-Max recognizing DNA. Molecular bases of regulation by proto-oncogenic transcription factors., Nair SK, Burley SK, Cell 2003 Jan 24;112(2):193-205. PMID:12553908
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (1nkp.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (1nkp.pdb2.gz) 49 Kb
  • CSU: Contacts of Structural Units for 1NKP
  • Likely Quarternary Molecular Structure file(s) for 1NKP
  • Retrieve 1NKP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NKP from S2C, [Save to disk]
  • View 1NKP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NKP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NKP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nkpa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1nkpb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1nkpd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1nkpe_, region E [Jmol] [rasmolscript] [script source]
  • Fold representative 1nkp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nkp_F] [1nkp_J] [1nkp_B] [1nkp_D] [1nkp_G] [1nkp] [1nkp_E] [1nkp_A] [1nkp_H]
  • SWISS-PROT database: [P61244] [P01106]
  • Domain organization of [MAX_HUMAN] [MYC_HUMAN] by SWISSPFAM
  • Domain found in 1NKP: [HLH ] by SMART
  • Other resources with information on 1NKP
  • Community annotation for 1NKP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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