1NPH Gelsolin Domains 4-6 in Active, Actin Free Conformation Identifies Sites of Regulatory Calcium Ions date
authors Kolappan, S., Gooch, J.T., Weeds, A.G., McLaughlin, P.J.
compound source
symmetry
R_factor
R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand CA enzyme
related structures by homologous chain: 1H1V
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGelsolin domains 4-6 in active, actin-free conformation identifies sites of regulatory calcium ions., Kolappan S, Gooch JT, Weeds AG, McLaughlin PJ, J Mol Biol 2003 May 23;329(1):85-92. PMID:12742020
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1nph.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1NPH
  • CSU: Contacts of Structural Units for 1NPH
  • Likely Quarternary Molecular Structure file(s) for 1NPH
  • Structure Factors (106 Kb)
  • Retrieve 1NPH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NPH from S2C, [Save to disk]
  • Re-refined 1nph structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NPH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NPH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NPH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1npha1, region A:414-532 [Jmol] [rasmolscript] [script source]
        - Domain d1npha2, region A:533-628 [Jmol] [rasmolscript] [script source]
        - Domain d1npha3, region A:629-742 [Jmol] [rasmolscript] [script source]
  • Fold representative 1nph from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nph] [1nph_A]
  • SWISS-PROT database: [P13020]
  • Domain organization of [GELS_MOUSE] by SWISSPFAM
  • Domain found in 1NPH: [GEL ] by SMART
  • Other resources with information on 1NPH
  • Community annotation for 1NPH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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