1NPH	Gelsolin Domains 4-6 in Active, Actin Free Conformation Identifies Sites of Regulatory Calcium Ions	date
authors	Kolappan, S., Gooch, J.T., Weeds, A.G., McLaughlin, P.J.
compound		source
symmetry		R_factor R_Free 0.299
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.00
ligand	CA	enzyme
related structures	by homologous chain: 1H1V
Gene Ontology	Chain Function Process Component A
Primary reference	Gelsolin domains 4-6 in active, actin-free conformation identifies sites of regulatory calcium ions., Kolappan S, Gooch JT, Weeds AG, McLaughlin PJ, J Mol Biol 2003 May 23;329(1):85-92. PMID:12742020

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (1nph.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 1NPH CSU: Contacts of Structural Units for 1NPH Likely Quarternary Molecular Structure file(s) for 1NPH Structure Factors (106 Kb) Retrieve 1NPH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NPH from S2C, [Save to disk] Re-refined 1nph structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1NPH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NPH

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1NPH, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1npha1, region A:414-532 [Jmol] [rasmolscript] [script source]     - Domain d1npha2, region A:533-628 [Jmol] [rasmolscript] [script source]     - Domain d1npha3, region A:629-742 [Jmol] [rasmolscript] [script source] Fold representative 1nph from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1nph] [1nph_A] SWISS-PROT database: [P13020] Domain organization of [GELS_MOUSE] by SWISSPFAM Domain found in 1NPH: [GEL ] by SMART

Other resources with information on 1NPH

Community annotation for 1NPH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---