1H1V Actin-Binding date Jul 23, 2002
title Gelsolin G4-G6actin Complex
authors H.Choe, L.D.Burtnick, M.Mejillano, H.L.Yin, R.C.Robinson, S.Choe
compound source
Molecule: Gelsolin
Chain: G
Fragment: G4-G6, Residues 412-742 Of Cytoplasmic Isoform
Synonym: Actin-Depolymerizing Factor, Brevin, Agel
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: Actin
Chain: A

Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Muscle
symmetry Space Group: P 21 21 21
R_factor 0.219 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.350 113.450 159.350 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.0 Å
ligand ATP, CA enzyme
note 1H1V supersedes 1DB0
related structures by homologous chain: 1D0N, 1NPH, 1RFQ, 1RGI
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe calcium activation of gelsolin: insights from the 3A structure of the G4-G6/actin complex., Choe H, Burtnick LD, Mejillano M, Yin HL, Robinson RC, Choe S, J Mol Biol. 2002 Dec 6;324(4):691-702. PMID:12460571
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (1h1v.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 1H1V
  • CSU: Contacts of Structural Units for 1H1V
  • Likely Quarternary Molecular Structure file(s) for 1H1V
  • Structure Factors (157 Kb)
  • Retrieve 1H1V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H1V from S2C, [Save to disk]
  • Re-refined 1h1v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H1V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H1V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1H1V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h1va2, region A:147-375 [Jmol] [rasmolscript] [script source]
        - Domain d1h1va1, region A:5-146 [Jmol] [rasmolscript] [script source]
        - Domain d1h1vg1, region G:412-532 [Jmol] [rasmolscript] [script source]
        - Domain d1h1vg2, region G:533-628 [Jmol] [rasmolscript] [script source]
        - Domain d1h1vg3, region G:629-742 [Jmol] [rasmolscript] [script source]
  • Fold representative 1h1v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h1v_A] [1h1v] [1h1v_G]
  • SWISS-PROT database: [P68135] [P06396]
  • Domain organization of [ACTS_RABIT] [GELS_HUMAN] by SWISSPFAM
  • Domains found in 1H1V: [ACTIN] [GEL ] by SMART
  • Alignments of the sequence of 1H1V with the sequences similar proteins can be viewed for 1H1V's classification [ACTS_RABIT] [GELS_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ACTS_RABIT] [GELS_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1H1V
  • Community annotation for 1H1V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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