1D0N THE CRYSTAL STRUCTURE OF CALCIUM-FREE EQUINE PLASMA GELSOLIN. date
authors Burtnick, L.D., Robinson, R., Li, C.
compound source
symmetry
R_factor
R_Free 0.2376
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
related structures by homologous chain: 1C0F, 1H1V, 1P8Z
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structure of plasma gelsolin: implications for actin severing, capping, and nucleation., Burtnick LD, Koepf EK, Grimes J, Jones EY, Stuart DI, McLaughlin PJ, Robinson RC, Cell 1997 Aug 22;90(4):661-70. PMID:9288746
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk]
  • Biological Unit Coordinates (1d0n.pdb1.gz) 236 Kb
  • Biological Unit Coordinates (1d0n.pdb2.gz) 931 Kb
  • CSU: Contacts of Structural Units for 1D0N
  • Likely Quarternary Molecular Structure file(s) for 1D0N
  • Structure Factors (639 Kb)
  • Retrieve 1D0N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D0N from S2C, [Save to disk]
  • Re-refined 1d0n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1D0N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D0N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1D0N, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d0na2, region A:153-262 [Jmol] [rasmolscript] [script source]
        - Domain d1d0na3, region A:263-383 [Jmol] [rasmolscript] [script source]
        - Domain d1d0na1, region A:27-152 [Jmol] [rasmolscript] [script source]
        - Domain d1d0na4, region A:384-532 [Jmol] [rasmolscript] [script source]
        - Domain d1d0na5, region A:533-628 [Jmol] [rasmolscript] [script source]
        - Domain d1d0na6, region A:629-755 [Jmol] [rasmolscript] [script source]
        - Domain d1d0nb2, region B:153-262 [Jmol] [rasmolscript] [script source]
        - Domain d1d0nb3, region B:263-383 [Jmol] [rasmolscript] [script source]
        - Domain d1d0nb1, region B:27-152 [Jmol] [rasmolscript] [script source]
        - Domain d1d0nb4, region B:384-532 [Jmol] [rasmolscript] [script source]
        - Domain d1d0nb5, region B:533-628 [Jmol] [rasmolscript] [script source]
        - Domain d1d0nb6, region B:629-755 [Jmol] [rasmolscript] [script source]
  • Fold representative 1d0n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d0n] [1d0n_B] [1d0n_A]
  • SWISS-PROT database: [Q28372]
  • Domain organization of [GELS_HORSE] by SWISSPFAM
  • Domain found in 1D0N: [GEL ] by SMART
    • Other resources with information on 1D0N
  • Community annotation for 1D0N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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