1P8Z Structural Protein Contractile Protein date May 08, 2003
title Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Residues Val26-Glu156
authors E.Irobi, L.D.Burtnick, R.C.Robinson
compound source
Molecule: Gelsolin Precursor, Plasma
Chain: G
Synonym: Actin-Depolymerizing Factor, Adf, Brevin, Agel
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Actin, Alpha Skeletal Muscle
Chain: A
Synonym: Alpha-Actin 1

Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
symmetry Space Group: P 31 1 2
R_factor 0.208 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.220 114.220 93.770 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand ATP, CA, CD enzyme
related structures by homologous chain: 1D0N, 1HLU, 1RGI, 2BTF, 2VIK
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFrom the first to the second domain of gelsolin: a common path on the surface of actin?, Irobi E, Burtnick LD, Urosev D, Narayan K, Robinson RC, FEBS Lett 2003 Sep 25;552(2-3):86-90. PMID:14527665
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1p8z.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (1p8z.pdb2.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 1P8Z
  • CSU: Contacts of Structural Units for 1P8Z
  • Likely Quarternary Molecular Structure file(s) for 1P8Z
  • Structure Factors (153 Kb)
  • Retrieve 1P8Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P8Z from S2C, [Save to disk]
  • Re-refined 1p8z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1P8Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P8Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P8Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p8za2, region A:147-370 [Jmol] [rasmolscript] [script source]
        - Domain d1p8za1, region A:6-146 [Jmol] [rasmolscript] [script source]
        - Domain d1p8zg_, region G [Jmol] [rasmolscript] [script source]
  • Fold representative 1p8z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p8z_G] [1p8z] [1p8z_A]
  • SWISS-PROT database: [P68135] [P06396]
  • Domain organization of [ACTS_RABIT] [GELS_HUMAN] by SWISSPFAM
  • Domains found in 1P8Z: [ACTIN] [GEL ] by SMART
  • Other resources with information on 1P8Z
  • Community annotation for 1P8Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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