1NVP HUMAN TFIIA/TBP/DNA COMPLEX date
authors Bleichenbacher, M., Tan, S., Richmond, T.J.
compound source
symmetry
R_factor
R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
related structures by homologous chain: 1QNB, 1VOK
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


Primary referenceNovel interactions between the components of human and yeast TFIIA/TBP/DNA complexes., Bleichenbacher M, Tan S, Richmond TJ, J Mol Biol 2003 Sep 26;332(4):783-93. PMID:12972251
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (1nvp.pdb1.gz) 79 Kb
  • CSU: Contacts of Structural Units for 1NVP
  • Likely Quarternary Molecular Structure file(s) for 1NVP
  • Structure Factors (319 Kb)
  • Retrieve 1NVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NVP from S2C, [Save to disk]
  • Re-refined 1nvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1NVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NVP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NVP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nvpa1, region A:159-252 [Jmol] [rasmolscript] [script source]
        - Domain d1nvpa2, region A:253-338 [Jmol] [rasmolscript] [script source]
        - Domain d1nvpb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1nvpc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1nvpd1, region D:3-53 [Jmol] [rasmolscript] [script source]
        - Domain d1nvpd2, region D:54-99 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nvp_B] [1nvp] [1nvp_D] [1nvp_E] [1nvp_F] [1nvp_A] [1nvp_C]
  • SWISS-PROT database: [P52657] [P20226] [P52655]
  • Domain organization of [T2AG_HUMAN] [TBP_HUMAN] [TF2AA_HUMAN] by SWISSPFAM
  • Domain found in 1NVP: [TFIIA ] by SMART
    • Other resources with information on 1NVP
  • Community annotation for 1NVP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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