1VOK ARABIDOPSIS THALIANA TBP (DIMER) date
authors Burley SK, Nikolov DB
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand SO4 enzyme
related structures by homologous chain: 1NVP, 1QN8
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • obsolete general RNA polymer...


    • Primary reference2.1 A resolution refined structure of a TATA box-binding protein (TBP)., Nikolov DB, Burley SK, Nat Struct Biol 1994 Sep;1(9):621-37. PMID:7634102
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (1vok.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (1vok.pdb2.gz) 33 Kb
  • Biological Unit Coordinates (1vok.pdb3.gz) 130 Kb
  • Biological Unit Coordinates (1vok.pdb4.gz) 130 Kb
  • Biological Unit Coordinates (1vok.pdb5.gz) 66 Kb
  • Biological Unit Coordinates (1vok.pdb6.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 1VOK
  • CSU: Contacts of Structural Units for 1VOK
  • Likely Quarternary Molecular Structure file(s) for 1VOK
  • Retrieve 1VOK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VOK from S2C, [Save to disk]
    • View 1VOK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VOK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VOK, from MSDmotif at EBI
  • Genome occurence of 1VOK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1voka2, region A:116-198 [Jmol] [rasmolscript] [script source]
        - Domain d1voka1, region A:7-115 [Jmol] [rasmolscript] [script source]
        - Domain d1vokb2, region B:116-199 [Jmol] [rasmolscript] [script source]
        - Domain d1vokb1, region B:12-115 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vok] [1vok_A] [1vok_B]
  • SWISS-PROT database: [P28147]
  • Domain organization of [TBP1_ARATH] by SWISSPFAM
    • Other resources with information on 1VOK
  • Community annotation for 1VOK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1VOK from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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