1NWM Protein Transport date Feb 06, 2003
title Gat Domain Of Human Gga1
authors S.Suer, S.Misra, L.F.Saidi, J.H.Hurley
compound source
Molecule: Adp-Ribosylation Factor Binding Protein Gga1
Chain: X
Fragment: Gat Domain
Synonym: Golgi-Localized, Gamma Ear-Containing, Arf- Binding Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis-Parallel2
symmetry Space Group: H 3
R_factor 0.252 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.660 76.660 60.816 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
related structures by homologous chain: 1O3X, 1X79
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceStructure of the GAT domain of human GGA1: a syntaxin amino-terminal domain fold in an endosomal trafficking adaptor., Suer S, Misra S, Saidi LF, Hurley JH, Proc Natl Acad Sci U S A 2003 Apr 15;100(8):4451-6. PMID:12668765
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (1nwm.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 1NWM
  • Likely Quarternary Molecular Structure file(s) for 1NWM
  • Structure Factors (64 Kb)
  • Retrieve 1NWM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NWM from S2C, [Save to disk]
  • Re-refined 1nwm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NWM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NWM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NWM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nwmx_, region X [Jmol] [rasmolscript] [script source]
  • Fold representative 1nwm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nwm_X] [1nwm]
  • SWISS-PROT database: [Q9UJY5]
  • Domain organization of [GGA1_HUMAN] by SWISSPFAM
  • Other resources with information on 1NWM
  • Community annotation for 1NWM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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