1O3X Protein Transport date May 08, 2003
title Crystal Structure Of Human Gga1 Gat Domain
authors T.Shiba, M.Kawasaki, H.Takatsu, T.Nogi, N.Matsugaki, N.Igarashi, M R.Kato, K.Nakayama, S.Wakatsuki
compound source
Molecule: Adp-Ribosylation Factor Binding Protein Gga1
Chain: A
Fragment: Gat Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-2
symmetry Space Group: H 3
R_factor 0.245 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.110 85.110 59.001 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
note 1O3X supersedes 1J2H
related structures by homologous chain: 1NWM
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport., Shiba T, Kawasaki M, Takatsu H, Nogi T, Matsugaki N, Igarashi N, Suzuki M, Kato R, Nakayama K, Wakatsuki S, Nat Struct Biol 2003 May;10(5):386-93. PMID:12679809
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1o3x.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1O3X
  • Likely Quarternary Molecular Structure file(s) for 1O3X
  • Structure Factors (75 Kb)
  • Retrieve 1O3X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O3X from S2C, [Save to disk]
  • Re-refined 1o3x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1O3X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1O3X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O3X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o3xa_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o3x_A] [1o3x]
  • SWISS-PROT database: [Q9UJY5]
  • Domain organization of [GGA1_HUMAN] by SWISSPFAM
    • Other resources with information on 1O3X
  • Community annotation for 1O3X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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