1O4F CRYSTAL STRUCTURE OF SH2 IN COMPLEX WITH RU79073. date
authors Lange, G., Loenze, P., Liesum, A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand 790, CSO BindingDB enzyme
related structures by homologous chain: 1O4E, 1Y57
Primary referenceRequirements for specific binding of low affinity inhibitor fragments to the SH2 domain of (pp60)Src are identical to those for high affinity binding of full length inhibitors., Lange G, Lesuisse D, Deprez P, Schoot B, Loenze P, Benard D, Marquette JP, Broto P, Sarubbi E, Mandine E, J Med Chem 2003 Nov 20;46(24):5184-95. PMID:14613321
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (1o4f.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1O4F
  • CSU: Contacts of Structural Units for 1O4F
  • Likely Quarternary Molecular Structure file(s) for 1O4F
  • Retrieve 1O4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O4F from S2C, [Save to disk]
    • View 1O4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1O4F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O4F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o4fa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o4f_A] [1o4f]
  • SWISS-PROT database: [P12931]
  • Domain organization of [SRC_HUMAN] by SWISSPFAM
  • Domain found in 1O4F: [SH2 ] by SMART
    • Other resources with information on 1O4F
  • Community annotation for 1O4F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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