1Y57 Structure of unphosphorylated c-Src in complex with an inhibitor date
authors Cowan-Jacob, S.W., Fendrich, G., Manley, P.W., Jahnke, W., Fabbro, D., Liebetanz, J., Meyer, T.
compound source
symmetry
R_factor
R_Free 0.2134
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.91
ligand MPZ, SO4 BindingDB enzyme
related structures by homologous chain: 1IS0, 1O4F, 1QPE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Crystal Structure of a c-Src Complex in an Active Conformation Suggests Possible Steps in c-Src Activation., Cowan-Jacob SW, Fendrich G, Manley PW, Jahnke W, Fabbro D, Liebetanz J, Meyer T, Structure (Camb) 2005 Jun;13(6):861-71. PMID:15939018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (1y57.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 1Y57
  • CSU: Contacts of Structural Units for 1Y57
  • Likely Quarternary Molecular Structure file(s) for 1Y57
  • Structure Factors (410 Kb)
  • Retrieve 1Y57 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y57 from S2C, [Save to disk]
  • Re-refined 1y57 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Y57 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Y57
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Y57, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y57] [1y57_A]
  • SWISS-PROT database: [P12931]
  • Domain organization of [SRC_HUMAN] by SWISSPFAM
  • Domains found in 1Y57: [SH2] [SH3] [TyrKc ] by SMART
  • Other resources with information on 1Y57
  • Community annotation for 1Y57 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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