1O6E	Hydrolase	date	Sep 13, 2002
title	Epstein-Barr Virus Protease
authors	M.Buisson, J.Hernandez, D.Lascoux, G.Schoehn, E.Forest, G.Arlaud, J.Seigneurin, R.W.H.Ruigrok, W.P.Burmeister
compound		source
Molecule: Capsid Protein P40 Chain: A, B Fragment: Coat Protein Vp24 (Protease) Domain, Residues 1-2 Synonym: Assemblin, Virion Structural Protein Bvrf2, Ec-Rf3 Rf3a, Protease, Capsid Protein Vp22a; Ec: 3.4.21.97 Engineered: Yes Mutation: Yes		Organism_scientific: Human Herpesvirus 4 Organism_common: Human Herpesvirus 4 Organism_taxid: 10376 Strain: B95-8 Cell_line: B95-8 Marmoset Cell Line Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet28a
symmetry	Space Group: P 31 2 1	R_factor 0.197 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.800 52.800 330.500 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	ISP	enzyme	Hydrolase E.C.3.4.21.97 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	The crystal structure of the Epstein-Barr virus protease shows rearrangement of the processed C terminus., Buisson M, Hernandez JF, Lascoux D, Schoehn G, Forest E, Arlaud G, Seigneurin JM, Ruigrok RW, Burmeister WP, J Mol Biol 2002 Nov 15;324(1):89-103. PMID:12421561

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (1o6e.pdb1.gz) 143 Kb LPC: Ligand-Protein Contacts for 1O6E CSU: Contacts of Structural Units for 1O6E Likely Quarternary Molecular Structure file(s) for 1O6E Structure Factors (188 Kb) Retrieve 1O6E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1O6E from S2C, [Save to disk] Re-refined 1o6e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1O6E in 3D

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Visual 3D analysis of 1O6E

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1O6E, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1o6ea_, region A [Jmol] [rasmolscript] [script source]     - Domain d1o6eb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1o6e_A] [1o6e_B] [1o6e] SWISS-PROT database: [P03234] Domain organization of [PPR_EBVB9] by SWISSPFAM

Other resources with information on 1O6E

Community annotation for 1O6E at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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