1O9U Transferase Transferase Substrate date Dec 19, 2002
title Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide
authors R.Dajani, L.H.Pearl, S.M.Roe
compound source
Molecule: Glycogen Synthase Kinase-3 Beta
Chain: A
Fragment: Residues 35-384
Synonym: Gsk-3 Beta, Gsk3b
Engineered: Yes
Other_details: Phosphotyrosine At A216
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_plasmid: Pfastbac Hta

Molecule: Axin Peptide
Chain: B
Fragment: Residues 383-400
Synonym: Axis Inhibition Protein 1, Haxin, Axin1, Axin
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Axin Peptide
symmetry Space Group: P 61 2 2
R_factor 0.233 R_Free 0.260
length a length b length c angle alpha angle beta angle gamma
81.950 81.950 282.440 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand ADZ, PTR enzyme Transferase E.C. BRENDA
related structures by homologous chain: 1GNG, 1PYX

Primary referenceStructural basis for recruitment of glycogen synthase kinase 3beta to the axin-APC scaffold complex., Dajani R, Fraser E, Roe SM, Yeo M, Good VM, Thompson V, Dale TC, Pearl LH, EMBO J 2003 Feb 3;22(3):494-501. PMID:12554650
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (1o9u.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 1O9U
  • CSU: Contacts of Structural Units for 1O9U
  • Likely Quarternary Molecular Structure file(s) for 1O9U
  • Structure Factors (167 Kb)
  • Retrieve 1O9U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O9U from S2C, [Save to disk]
  • Re-refined 1o9u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1O9U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O9U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1O9U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o9ua_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1o9u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o9u] [1o9u_A] [1o9u_B]
  • SWISS-PROT database: [O15169] [P49841]
  • Domain organization of [AXN1_HUMAN] [GSK3B_HUMAN] by SWISSPFAM
  • Domain found in 1O9U: [S_TKc ] by SMART
  • Other resources with information on 1O9U
  • Community annotation for 1O9U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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