1PYX Transferase date Jul 09, 2003
title Gsk-3 Beta Complexed With Amp-Pnp
authors J.A.Bertrand, S.Thieffine, A.Vulpetti, C.Cristiani, B.Valsasina, S.Knapp, H.M.Kalisz, M.Flocco
compound source
Molecule: Glycogen Synthase Kinase-3 Beta
Chain: A, B
Synonym: Gsk-3 Beta
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gsk3b
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: H5
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pvl-Gst-Gsk3beta
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.691 85.209 178.138 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ANP, MG enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1O9U, 1Q3W
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • protein serine/threonine kin...
  • chemical synaptic transmissi...
  • positive regulation of mitoc...
  • beta-catenin destruction com...
  • Primary referenceStructural characterization of the GSK-3beta active site using selective and non-selective ATP-mimetic inhibitors., Bertrand JA, Thieffine S, Vulpetti A, Cristiani C, Valsasina B, Knapp S, Kalisz HM, Flocco M, J Mol Biol 2003 Oct 17;333(2):393-407. PMID:14529625
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (1pyx.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 1PYX
  • CSU: Contacts of Structural Units for 1PYX
  • Likely Quarternary Molecular Structure file(s) for 1PYX
  • Structure Factors (421 Kb)
  • Retrieve 1PYX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PYX from S2C, [Save to disk]
  • Re-refined 1pyx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PYX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PYX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PYX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pyxa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pyxb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1pyx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pyx_A] [1pyx] [1pyx_B]
  • SWISS-PROT database: [P49841]
  • Domain organization of [GSK3B_HUMAN] by SWISSPFAM
  • Domain found in 1PYX: [S_TKc ] by SMART
  • Other resources with information on 1PYX
  • Community annotation for 1PYX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science