1PYX GSK-3 Beta complexed with AMP-PNP date
authors Bertrand, J.A., Thieffine, S., Vulpetti, A., Cristiani, C., Valsasina, B., Knapp, S., Kalisz, H.M., Flocco, M.
compound source
R_Free 0.233
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand ANP, MG enzyme
related structures by homologous chain: 1O9U, 1Q3W
A, B
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  • Primary referenceStructural characterization of the GSK-3beta active site using selective and non-selective ATP-mimetic inhibitors., Bertrand JA, Thieffine S, Vulpetti A, Cristiani C, Valsasina B, Knapp S, Kalisz HM, Flocco M, J Mol Biol 2003 Oct 17;333(2):393-407. PMID:14529625
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (1pyx.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 1PYX
  • CSU: Contacts of Structural Units for 1PYX
  • Likely Quarternary Molecular Structure file(s) for 1PYX
  • Structure Factors (421 Kb)
  • Retrieve 1PYX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PYX from S2C, [Save to disk]
  • Re-refined 1pyx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PYX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PYX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PYX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pyxa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pyxb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1pyx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pyx_A] [1pyx] [1pyx_B]
  • SWISS-PROT database: [P49841]
  • Domain organization of [GSK3B_HUMAN] by SWISSPFAM
  • Domain found in 1PYX: [S_TKc ] by SMART
  • Other resources with information on 1PYX
  • Community annotation for 1PYX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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