1OBX Crystal structure of the complex of PDZ2 of syntenin with an interleukin 5 receptor alpha peptide. date
authors Kang, B.S., Cooper, D.R., Devedjiev, Y., Derewenda, U., Derewenda, Z.S.
compound source
symmetry
R_factor
R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.35
ligand CO, SO4 enzyme
related structures by homologous chain: 1NTE, 1OBZ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular roots of degenerate specificity in syntenin's PDZ2 domain: reassessment of the PDZ recognition paradigm., Kang BS, Cooper DR, Devedjiev Y, Derewenda U, Derewenda ZS, Structure (Camb) 2003 Jul;11(7):845-53. PMID:12842047
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1obx.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 1OBX
  • CSU: Contacts of Structural Units for 1OBX
  • Likely Quarternary Molecular Structure file(s) for 1OBX
  • Structure Factors (279 Kb)
  • Retrieve 1OBX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OBX from S2C, [Save to disk]
  • Re-refined 1obx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OBX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OBX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1OBX 1OBXA 1OBXB from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OBX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1obxa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1obx_B] [1obx] [1obx_A]
  • SWISS-PROT database: [Q01344] [O00560]
  • Belongs to the ezrin/radixin/moesin-binding phosphoprotein 50 (ebp50) family according to TCDB.
  • Domain organization of [IL5RA_HUMAN] [SDCB1_HUMAN] by SWISSPFAM
  • Domain found in 1OBX: [PDZ ] by SMART
  • Other resources with information on 1OBX
  • Community annotation for 1OBX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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