1OGM	Hydrolase	date	May 07, 2003
title	Dex49a From Penicillium Minioluteum
authors	A.M.Larsson, J.Stahlberg, T.A.Jones
compound		source
Molecule: Dextranase Chain: X Synonym: Alpha-1,6-Glucan-6-Glucanohydrolase Ec: 3.2.1.11 Engineered: Yes Mutation: Yes		Organism_scientific: Penicillium Minioluteum Organism_taxid: 28574 Strain: Hi-4 Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_strain: Mp36 Expression_system_variant: His3 Expression_system_vector: Pps-7
symmetry	Space Group: P 21 21 2	R_factor 0.142 R_Free 0.165
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.670 115.516 50.040 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.8 Å
ligand		enzyme	Hydrolase E.C.3.2.1.11 BRENDA
related structures	by homologous chain: 1MKF, 1OGO
Gene Ontology	Chain Function Process Component X
Primary reference	Dextranase from Penicillium minioluteum: reaction course, crystal structure, and product complex., Larsson AM, Andersson R, Stahlberg J, Kenne L, Jones TA, Structure (Camb) 2003 Sep;11(9):1111-21. PMID:12962629

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk] Biological Unit Coordinates (1ogm.pdb1.gz) 99 Kb CSU: Contacts of Structural Units for 1OGM Likely Quarternary Molecular Structure file(s) for 1OGM Structure Factors (761 Kb) Retrieve 1OGM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OGM from S2C, [Save to disk] Re-refined 1ogm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OGM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OGM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OGM, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ogmx2, region X:202-574 [Jmol] [rasmolscript] [script source]     - Domain d1ogmx1, region X:3-201 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ogm_X] [1ogm] SWISS-PROT database: [P48845] Domain organization of [DEXT_PENMI] by SWISSPFAM

Other resources with information on 1OGM

Community annotation for 1OGM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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