1OIT Kinase date Jun 24, 2003
title Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation
authors J.F.Beattie, G.A.Breault, K.F.Byth, J.D.Culshaw, R.P.A.Ellston, S.Green, C.A.Minshull, R.A.Norman, R.A.Pauptit, A.P.Thomas, P.J.Jewsbury
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.22590 R_Free 0.24013
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.466 72.239 72.227 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand HDT BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1H01, 1URW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceImidazo[1,2-a]pyridines: a potent and selective class of cyclin-dependent kinase inhibitors identified through structure-based hybridisation., Anderson M, Beattie JF, Breault GA, Breed J, Byth KF, Culshaw JD, Ellston RP, Green S, Minshull CA, Norman RA, Pauptit RA, Stanway J, Thomas AP, Jewsbury PJ, Bioorg Med Chem Lett 2003 Sep 15;13(18):3021-6. PMID:12941325
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1oit.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1OIT
  • CSU: Contacts of Structural Units for 1OIT
  • Likely Quarternary Molecular Structure file(s) for 1OIT
  • Structure Factors (215 Kb)
  • Retrieve 1OIT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OIT from S2C, [Save to disk]
  • Re-refined 1oit structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OIT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OIT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OIT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oita_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1oit from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oit_A] [1oit]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1OIT: [S_TKc ] by SMART
  • Other resources with information on 1OIT
  • Community annotation for 1OIT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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