1URW Transferase date Nov 11, 2003
title Cdk2 In Complex With An Imidazo[1,2-B]Pyridazine
authors K.F.Byth, N.Cooper, J.D.Culshaw, D.W.Heaton, S.E.Oakes, C.A.Minshull, R.A.Norman, R.A.Pauptit, J.A.Tucker, J.Breed, A.Pannifer, S.Rowsell, J.J.Stanway, A.L.Valentine, A.P.Thomas
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Other_details: N-Terminal Methionine Is Modified By Acetylation
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.22 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.169 72.876 73.351 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.6 Å
ligand ACE, I1P enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1H00, 1OIT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceImidazo[1,2-b]pyridazines: a potent and selective class of cyclin-dependent kinase inhibitors., Byth KF, Cooper N, Culshaw JD, Heaton DW, Oakes SE, Minshull CA, Norman RA, Pauptit RA, Tucker JA, Breed J, Pannifer A, Rowsell S, Stanway JJ, Valentine AL, Thomas AP, Bioorg Med Chem Lett 2004 May 3;14(9):2249-52. PMID:15081018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1urw.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1URW
  • CSU: Contacts of Structural Units for 1URW
  • Likely Quarternary Molecular Structure file(s) for 1URW
  • Structure Factors (377 Kb)
  • Retrieve 1URW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1URW from S2C, [Save to disk]
  • Re-refined 1urw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1URW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1URW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1URW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1urwa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1urw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1urw_A] [1urw]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1URW: [S_TKc ] by SMART
  • Other resources with information on 1URW
  • Community annotation for 1URW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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