1OIY Structure of human Thr160-phospho CDK2/cyclin A complexed with a 6-cyclohexylmethyloxy-2-anilino-purine inhibitor date
authors Pratt, D.J., Endicott, J.A., Noble, M.E.M.
compound source
symmetry
R_factor
R_Free 0.309
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand MG, N41, SGM, TPO enzyme
related structures by homologous chain: 1OIQ, 1OKW, 1VYW
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceN2-substituted O6-cyclohexylmethylguanine derivatives: potent inhibitors of cyclin-dependent kinases 1 and 2., Hardcastle IR, Arris CE, Bentley J, Boyle FT, Chen Y, Curtin NJ, Endicott JA, Gibson AE, Golding BT, Griffin RJ, Jewsbury P, Menyerol J, Mesguiche V, Newell DR, Noble ME, Pratt DJ, Wang LZ, Whitfield HJ, J Med Chem. 2004 Jul 15;47(15):3710-22. PMID:15239650
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk]
  • Biological Unit Coordinates (1oiy.pdb1.gz) 97 Kb
  • Biological Unit Coordinates (1oiy.pdb2.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 1OIY
  • CSU: Contacts of Structural Units for 1OIY
  • Likely Quarternary Molecular Structure file(s) for 1OIY
  • Structure Factors (781 Kb)
  • Retrieve 1OIY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OIY from S2C, [Save to disk]
  • Re-refined 1oiy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OIY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OIY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OIY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oiya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1oiyb1, region B:175-309 [Jmol] [rasmolscript] [script source]
        - Domain d1oiyb2, region B:310-432 [Jmol] [rasmolscript] [script source]
        - Domain d1oiyc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1oiyd1, region D:175-309 [Jmol] [rasmolscript] [script source]
        - Domain d1oiyd2, region D:310-432 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oiy] [1oiy_A] [1oiy_B] [1oiy_D] [1oiy_C]
  • SWISS-PROT database: [P20248] [P24941]
  • Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM
  • Domains found in 1OIY: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 1OIY
  • Community annotation for 1OIY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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