1OJT	Oxidoreductase	date	Sep 06, 1996
title	Structure Of Dihydrolipoamide Dehydrogenase
authors	I.Li De La Sierra, T.Prange, L.Pernot
compound		source
Molecule: Surface Protein Chain: A Fragment: Dihydrolipoamide Dehydrogenase Domain Engineered: Yes		Organism_scientific: Neisseria Meningitidis Organism_taxid: 487 Gene: M-6 Obtained From A Genomic Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Hb101 Expression_system_gene: M-6 Obtained From A Genomic
symmetry	Space Group: P 43 21 2	R_factor R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 138.050 138.050 79.770 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.75 Å
ligand	FAD	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Molecular structure of the lipoamide dehydrogenase domain of a surface antigen from Neisseria meningitidis., Li de la Sierra I, Pernot L, Prange T, Saludjian P, Schiltz M, Fourme R, Padron G, J Mol Biol 1997 May 30;269(1):129-41. PMID:9193005

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk] Biological Unit Coordinates (1ojt.pdb1.gz) 148 Kb LPC: Ligand-Protein Contacts for 1OJT CSU: Contacts of Structural Units for 1OJT Likely Quarternary Molecular Structure file(s) for 1OJT Retrieve 1OJT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OJT from S2C, [Save to disk]

View 1OJT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OJT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OJT, from MSDmotif at EBI Genome occurence of 1OJT's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ojt_1, region 117-275,401-470 [Jmol] [rasmolscript] [script source]     - Domain d1ojt_2, region 276-400 [Jmol] [rasmolscript] [script source]     - Domain d1ojt_3, region 471-598 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ojt_A] [1ojt] SWISS-PROT database: [Q51225] Domain organization of [Q51225_NEIME] by SWISSPFAM

Other resources with information on 1OJT

Community annotation for 1OJT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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