1OLM Lipid-Binding Protein date Aug 08, 2003
title Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis
authors A.Stocker, U.Baumann
compound source
Molecule: Sec14-Like Protein 2
Chain: A, C
Synonym: Supernatant Protein Factor, Alpha-Tocopherol Associated Protein, Tap, Htap, Supernatant Protein Factor, Spf, Squalene Transfer Protein, Sec14l2, Kiaa1186;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pet-28

Molecule: Sec14-Like Protein 2
Chain: E
Synonym: Supernatant Protein Factor, Alpha-Tocopherol Associated Protein, Tap, Htap, Supernatant Protein Factor, Spf, Squalene Transfer Protein, Sec14l2, Kiaa1186;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pet-28
symmetry Space Group: P 1
R_factor 0.180 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.856 84.621 87.452 116.20 102.64 100.24
method X-Ray Diffractionresolution 1.95 Å
ligand VTQ enzyme
related structures by homologous chain: 1O6U
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


Primary referenceSupernatant protein factor in complex with RRR-alpha-tocopherylquinone: a link between oxidized Vitamin E and cholesterol biosynthesis., Stocker A, Baumann U, J Mol Biol. 2003 Sep 26;332(4):759-65. PMID:12972248
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk]
  • Biological Unit Coordinates (1olm.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (1olm.pdb2.gz) 71 Kb
  • Biological Unit Coordinates (1olm.pdb3.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 1OLM
  • CSU: Contacts of Structural Units for 1OLM
  • Likely Quarternary Molecular Structure file(s) for 1OLM
  • Retrieve 1OLM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OLM from S2C, [Save to disk]
  • View 1OLM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OLM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OLM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1olma1, region A:1-75 [Jmol] [rasmolscript] [script source]
        - Domain d1olma2, region A:275-393 [Jmol] [rasmolscript] [script source]
        - Domain d1olma3, region A:76-274 [Jmol] [rasmolscript] [script source]
        - Domain d1olmc1, region C:1-75 [Jmol] [rasmolscript] [script source]
        - Domain d1olmc2, region C:275-393 [Jmol] [rasmolscript] [script source]
        - Domain d1olmc3, region C:76-274 [Jmol] [rasmolscript] [script source]
        - Domain d1olme1, region E:1-75 [Jmol] [rasmolscript] [script source]
        - Domain d1olme2, region E:275-393 [Jmol] [rasmolscript] [script source]
        - Domain d1olme3, region E:76-274 [Jmol] [rasmolscript] [script source]
  • Fold representative 1olm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1olm_E] [1olm] [1olm_C] [1olm_A]
  • SWISS-PROT database: [O76054]
  • Domain organization of [S14L2_HUMAN] by SWISSPFAM
  • Domains found in 1OLM: [CRAL_TRIO_N] [SEC14 ] by SMART
  • Other resources with information on 1OLM
  • Community annotation for 1OLM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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