1O6U Transferase date Oct 16, 2002
title The Crystal Structure Of Human Supernatant Protein Factor
authors A.Stocker, C.Schulze-Briese, T.Tomizaki
compound source
Molecule: Sec14-Like Protein 2
Chain: A, C, E
Synonym: Supernatant Protein Factor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pet-28
symmetry Space Group: P 1
R_factor 0.204 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.794 84.240 87.111 116.26 102.39 99.87
method X-Ray Diffractionresolution 2.05 Å
ligand MSE, PLM enzyme
note 1O6U is a representative structure
related structures by homologous chain: 1OLM
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


Primary referenceCrystal structure of the human supernatant protein factor., Stocker A, Tomizaki T, Schulze-Briese C, Baumann U, Structure (Camb) 2002 Nov;10(11):1533-40. PMID:12429094
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk]
  • Biological Unit Coordinates (1o6u.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (1o6u.pdb2.gz) 70 Kb
  • Biological Unit Coordinates (1o6u.pdb3.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 1O6U
  • CSU: Contacts of Structural Units for 1O6U
  • Likely Quarternary Molecular Structure file(s) for 1O6U
  • Retrieve 1O6U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O6U from S2C, [Save to disk]
  • View 1O6U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O6U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1O6U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o6ua1, region A:1-75 [Jmol] [rasmolscript] [script source]
        - Domain d1o6ua2, region A:275-398 [Jmol] [rasmolscript] [script source]
        - Domain d1o6ua3, region A:76-274 [Jmol] [rasmolscript] [script source]
        - Domain d1o6uc1, region C:1-75 [Jmol] [rasmolscript] [script source]
        - Domain d1o6uc2, region C:275-396 [Jmol] [rasmolscript] [script source]
        - Domain d1o6uc3, region C:76-274 [Jmol] [rasmolscript] [script source]
        - Domain d1o6ue1, region E:1-75 [Jmol] [rasmolscript] [script source]
        - Domain d1o6ue2, region E:275-397 [Jmol] [rasmolscript] [script source]
        - Domain d1o6ue3, region E:76-274 [Jmol] [rasmolscript] [script source]
  • Fold representative 1o6u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o6u_C] [1o6u] [1o6u_E] [1o6u_A]
  • SWISS-PROT database: [O76054]
  • Domain organization of [S14L2_HUMAN] by SWISSPFAM
  • Domains found in 1O6U: [CRAL_TRIO_N] [SEC14 ] by SMART
  • Other resources with information on 1O6U
  • Community annotation for 1O6U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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