1OP1 Receptor Associated Protein date Mar 04, 2003
title Solution Nmr Structure Of Domain 1 Of Receptor Associated Protein
authors Y.Wu, M.Migliorini, P.Yu, D.K.Strickland, Y-X.Wang
compound source
Molecule: Alpha-2-Macroglobulin Receptor-Associated Protein Precursor;
Chain: A
Fragment: Domain 1 Of Receptor Associated Protein
Synonym: Alpha-2-Mrap, Low Density Lipoprotein Receptor- Related Protein- Associated Protein 1, Rap;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lrpap1 Or A2mrap
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Pgex-2t
methodSolution NMR
related structures by homologous chain: 1NRE, 1OV2
Primary reference1H, 13C and 15N resonance assignments of domain 1 of receptor associated protein., Wu Y, Migliorini M, Yu P, Strickland DK, Wang YX, J Biomol NMR 2003 Jun;26(2):187-8. PMID:12766414
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1OP1
  • Original NMR restraints for 1OP1 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1OP1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OP1 from S2C, [Save to disk]
  • View 1OP1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OP1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OP1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1op1a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1op1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1op1] [1op1_A]
  • SWISS-PROT database: [P30533]
  • Domain organization of [AMRP_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1OP1 with the sequences similar proteins can be viewed for 1OP1's classification [AMRP_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [AMRP_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1OP1
  • Community annotation for 1OP1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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