1OV2	Receptor Associated Protein	date	Mar 25, 2003
title	Ensemble Of The Solution Structures Of Domain One Of Receptor Associated Protein
authors	Y.Wu, M.Migliorini, P.Yu, D.K.Strickland, Y.X.Wang
compound		source
Molecule: Alpha-2-Macroglobulin Receptor-Associated Protein Precursor; Chain: A Fragment: Domain 1 Of Receptor Associated Protein Synonym: Alpha-2-Mrap, Low Density Lipoprotein Receptor- Related Protein- Associated Protein 1, Rap; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lrpap1 Or A2mrap Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pgex-2t
method	Solution NMR
related structures	by homologous chain: 1OP1
Gene Ontology	Chain Function Process Component A asialoglycoprotein receptor ... heparin binding lipase binding receptor antagonist activity... low-density lipoprotein part... unfolded protein binding very-low-density lipoprotein... protein folding negative regulation of very-... vesicle-mediated transport negative regulation of prote... extracellular negative regul... negative regulation of beta-... extracellular region cytoplasm endoplasmic reticulum plasma membrane cell surface integral to membrane vesicle rough endoplasmic reticulum ...
Primary reference	1H, 13C and 15N resonance assignments of domain 1 of receptor associated protein., Wu Y, Migliorini M, Yu P, Strickland DK, Wang YX, J Biomol NMR 2003 Jun;26(2):187-8. PMID:12766414

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1023 Kb) [Save to disk] CSU: Contacts of Structural Units for 1OV2 Original NMR restraints for 1OV2 from PDB Experimental data, such as chemical shifts, at BioMagResBank (BMRB) NMR Restraints Grid from BioMagResBank (BMRB) Retrieve 1OV2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OV2 from S2C, [Save to disk]

View 1OV2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1OV2

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1OV2, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ov2a_, region A [Jmol] [rasmolscript] [script source] Fold representative 1ov2 from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ov2_A] SWISS-PROT database: [P30533] Domain organization of [AMRP_HUMAN] by SWISSPFAM Alignments of the sequence of 1OV2 with the sequences similar proteins can be viewed for 1OV2's classification [AMRP_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [AMRP_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 1OV2

Community annotation for 1OV2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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