1OVL	Transcription	date	Mar 26, 2003
title	Crystal Structure Of Nurr1 Lbd
authors	Z.Wang, J.Liu, N.Walker
compound		source
Molecule: Orphan Nuclear Receptor Nurr1 (Mse 414, 496, 511); Chain: A, D Synonym: Immediate-Early Response Protein Not, Transcriptionally Inducible Nuclear Receptor; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr4a2 Or Nurr1 Or Tinur Or Not Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet-15b
Molecule: Orphan Nuclear Receptor Nurr1 (Mse 496, 511) Chain: B, C, E, F Synonym: Immediate-Early Response Protein Not, Transcriptionally Inducible Nuclear Receptor; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr4a2 Or Nurr1 Or Tinur Or Not Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet-15b
symmetry	Space Group: P 31	R_factor 0.217 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 80.383 80.383 227.370 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	BR, IOD, K, MSE	enzyme
related structures	by homologous chain: 1YJE
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Structure and function of Nurr1 identifies a class of ligand-independent nuclear receptors., Wang Z, Benoit G, Liu J, Prasad S, Aarnisalo P, Liu X, Xu H, Walker NP, Perlmann T, Nature 2003 May 29;423(6939):555-60. PMID:12774125

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk] Biological Unit Coordinates (1ovl.pdb1.gz) 235 Kb LPC: Ligand-Protein Contacts for 1OVL CSU: Contacts of Structural Units for 1OVL Likely Quarternary Molecular Structure file(s) for 1OVL Retrieve 1OVL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OVL from S2C, [Save to disk]

View 1OVL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OVL

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OVL, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ovla_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ovlb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1ovlc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1ovld_, region D [Jmol] [rasmolscript] [script source]     - Domain d1ovle_, region E [Jmol] [rasmolscript] [script source]     - Domain d1ovlf_, region F [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ovl_F] [1ovl_C] [1ovl_B] [1ovl_E] [1ovl] [1ovl_D] [1ovl_A] SWISS-PROT database: [P43354] Domain organization of [NR4A2_HUMAN] by SWISSPFAM Domain found in 1OVL: [HOLI ] by SMART

Other resources with information on 1OVL

Community annotation for 1OVL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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