1OZ3 Transcription date Apr 07, 2003
title Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant B (Native-I) At 1.85 Angstrom
authors W.K.Wang, V.Tereshko, P.Boccuni, D.Macgrogan, S.D.Nimer, D.J.Pate
compound source
Molecule: Lethal(3)Malignant Brain Tumor-Like Protein
Chain: A, B, C
Fragment: Residues 197-527
Synonym: L3, Mbt-Like, L3, Mbt Protein Homolog, H-L3, Mbt P L3, Mbt;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Brain
Gene: L3mbtl Or L3mbt Or Kiaa0681
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-De(3)Rp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-3
symmetry Space Group: P 32
R_factor 0.211 R_Free 0.245
length a length b length c angle alpha angle beta angle gamma
105.255 105.255 90.486 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.85 Å
ligand MES, MSE, SO4 enzyme
related structures by homologous chain: 1OYX, 1WJQ, 1WJS
A, C, B

Primary referenceMalignant brain tumor repeats: a three-leaved propeller architecture with ligand/peptide binding pockets., Wang WK, Tereshko V, Boccuni P, MacGrogan D, Nimer SD, Patel DJ, Structure (Camb) 2003 Jul;11(7):775-89. PMID:12842041
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (1oz3.pdb1.gz) 492 Kb
  • LPC: Ligand-Protein Contacts for 1OZ3
  • CSU: Contacts of Structural Units for 1OZ3
  • Likely Quarternary Molecular Structure file(s) for 1OZ3
  • Structure Factors (782 Kb)
  • Retrieve 1OZ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OZ3 from S2C, [Save to disk]
  • Re-refined 1oz3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OZ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OZ3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OZ3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oz3a1, region A:206-313 [Jmol] [rasmolscript] [script source]
        - Domain d1oz3a2, region A:314-421 [Jmol] [rasmolscript] [script source]
        - Domain d1oz3a3, region A:422-518 [Jmol] [rasmolscript] [script source]
        - Domain d1oz3b1, region B:206-313 [Jmol] [rasmolscript] [script source]
        - Domain d1oz3b2, region B:314-421 [Jmol] [rasmolscript] [script source]
        - Domain d1oz3b3, region B:422-518 [Jmol] [rasmolscript] [script source]
        - Domain d1oz3c1, region C:206-313 [Jmol] [rasmolscript] [script source]
        - Domain d1oz3c2, region C:314-421 [Jmol] [rasmolscript] [script source]
        - Domain d1oz3c3, region C:422-518 [Jmol] [rasmolscript] [script source]
  • Fold representative 1oz3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oz3_A] [1oz3_C] [1oz3_B] [1oz3]
  • SWISS-PROT database: [Q9Y468]
  • Domain organization of [LMBL1_HUMAN] by SWISSPFAM
  • Domain found in 1OZ3: [MBT ] by SMART
  • Other resources with information on 1OZ3
  • Community annotation for 1OZ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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