1OYX	Transcription	date	Apr 07, 2003
title	Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant Brain Tumor (Seleno-Met) At 1.85 Angstrom
authors	W.K.Wang, V.Tereshko, P.Boccuni, D.Macgrogan, S.D.Nimer, D.J.Patel
compound		source
Molecule: Lethal(3)Malignant Brain Tumor-Like Protein Chain: A, B, C Fragment: Residues 197-527 Synonym: L3, Mbt-Like, L3, Mbt Protein Homolog, H-L3, Mbt Protein, H-L3, Mbt; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Brain Gene: L3mbtl Or L3mbt Or Kiaa0681 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-De(3)Rp Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t-3
symmetry	Space Group: P 32	R_factor 0.207 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.656 105.656 90.369 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	MES, MSE, SO4	enzyme
related structures	by homologous chain: 1OZ2, 1OZ3
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Malignant brain tumor repeats: a three-leaved propeller architecture with ligand/peptide binding pockets., Wang WK, Tereshko V, Boccuni P, MacGrogan D, Nimer SD, Patel DJ, Structure (Camb) 2003 Jul;11(7):775-89. PMID:12842041

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk] Biological Unit Coordinates (1oyx.pdb1.gz) 498 Kb LPC: Ligand-Protein Contacts for 1OYX CSU: Contacts of Structural Units for 1OYX Likely Quarternary Molecular Structure file(s) for 1OYX Structure Factors (761 Kb) Retrieve 1OYX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OYX from S2C, [Save to disk] Re-refined 1oyx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OYX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OYX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OYX, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1oyxa1, region A:206-313 [Jmol] [rasmolscript] [script source]     - Domain d1oyxa2, region A:314-421 [Jmol] [rasmolscript] [script source]     - Domain d1oyxa3, region A:422-518 [Jmol] [rasmolscript] [script source]     - Domain d1oyxb1, region B:206-313 [Jmol] [rasmolscript] [script source]     - Domain d1oyxb2, region B:314-421 [Jmol] [rasmolscript] [script source]     - Domain d1oyxb3, region B:422-518 [Jmol] [rasmolscript] [script source]     - Domain d1oyxc1, region C:206-313 [Jmol] [rasmolscript] [script source]     - Domain d1oyxc2, region C:314-421 [Jmol] [rasmolscript] [script source]     - Domain d1oyxc3, region C:422-518 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1oyx_A] [1oyx] [1oyx_C] [1oyx_B] SWISS-PROT database: [Q9Y468] Domain organization of [LMBL1_HUMAN] by SWISSPFAM Domain found in 1OYX: [MBT ] by SMART

Other resources with information on 1OYX

Community annotation for 1OYX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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