1P93 Hormone Receptor date May 09, 2003
title Crystal Structure Of The Agonist Form Of Glucocorticoid Rece
authors B.Kauppi, C.Jakob, M.Farnegardh, J.Yang, H.Ahola, M.Alarcon, K.Cal O.Engstrom, J.Harlan, S.Muchmore, A.K.Ramqvist, S.Thorell, L.Oh J.Greer, J.A.Gustafsson, J.Carlstedt-Duke, M.Carlquist
compound source
Molecule: Glucocorticoid Receptor
Chain: A, B, C, D
Fragment: Residue 500-777, Hinge And Steroid Binding Domain
Synonym: Gr
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr3c1 Or Grl
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Nuclear Receptor Coactivator 2
Chain: E, F, G, H
Fragment: Tif Peptide 12mer
Synonym: Ncoa-2, Transcriptional Intermediary Factor 2
Engineered: Yes

Synthetic: Yes
Other_details: Synthetized Peptide
symmetry Space Group: P 31
R_factor 0.345 R_Free 0.363
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.400 127.400 91.800 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand DEX BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe three-dimensional structures of antagonistic and agonistic forms of the glucocorticoid receptor ligand-binding domain: RU-486 induces a transconformation that leads to active antagonism., Kauppi B, Jakob C, Farnegardh M, Yang J, Ahola H, Alarcon M, Calles K, Engstrom O, Harlan J, Muchmore S, Ramqvist AK, Thorell S, Ohman L, Greer J, Gustafsson JA, Carlstedt-Duke J, Carlquist M, J Biol Chem 2003 Jun 20;278(25):22748-54. PMID:12686538
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (1p93.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (1p93.pdb2.gz) 43 Kb
  • Biological Unit Coordinates (1p93.pdb3.gz) 43 Kb
  • Biological Unit Coordinates (1p93.pdb4.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1P93
  • CSU: Contacts of Structural Units for 1P93
  • Likely Quarternary Molecular Structure file(s) for 1P93
  • Structure Factors (595 Kb)
  • Retrieve 1P93 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P93 from S2C, [Save to disk]
  • Re-refined 1p93 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1P93 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P93
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P93, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p93a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1p93b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1p93c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1p93d_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1p93 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p93] [1p93_B] [1p93_E] [1p93_A] [1p93_D] [1p93_F] [1p93_H] [1p93_C] [1p93_G]
  • SWISS-PROT database: [P04150] [Q15596]
  • Domain organization of [GCR_HUMAN] [NCOA2_HUMAN] by SWISSPFAM
  • Domain found in 1P93: [HOLI ] by SMART
  • Other resources with information on 1P93
  • Community annotation for 1P93 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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