1P98 Replication date May 09, 2003
title High-Resolution Nmr Structure Of The Ubl-Domain Of Hhr23a
authors T.D.Mueller, J.Feigon
compound source
Molecule: Uv Excision Repair Protein Rad23 Homolog A
Chain: A
Fragment: Ubiquitin-Like Domain
Synonym: Hhr23a
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rad23a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1P1A, 1UEL
Primary referenceStructural determinants for the binding of ubiquitin-like domains to the proteasome., Mueller TD, Feigon J, EMBO J 2003 Sep 15;22(18):4634-45. PMID:12970176
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1P98
  • Retrieve 1P98 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P98 from S2C, [Save to disk]
  • View 1P98 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P98
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P98, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p98a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1p98 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p98_A] [1p98]
  • SWISS-PROT database: [P54725]
  • Domain organization of [RD23A_HUMAN] by SWISSPFAM
  • Domain found in 1P98: [UBQ ] by SMART
  • Other resources with information on 1P98
  • Community annotation for 1P98 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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