1UEL Gene Regulation Protein Binding date May 19, 2003
title Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a
authors K.Fujiwara, T.Tenno, J.G.Jee, K.Sugasawa, I.Ohki, C.Kojima, H.Tochio, H.Hiroaki, H.Hanaoka, M.Shirakawa, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Uv Excision Repair Protein Rad23 Homolog B
Chain: A
Fragment: Ubiquitin-Like Domain (Residues 1-95)
Synonym: Hhr23b
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24d

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 4
Chain: B
Fragment: Ubiquitin-Interacting Motif (Residues 201-248)
Synonym: S5a, 26s Proteasome Regulatory Subunit S5a
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11d
methodSolution NMR
related structures by homologous chain: 1P98, 1P9D, 1QZE
Primary referenceStructure of the Ubiquitin-interacting Motif of S5a Bound to the Ubiquitin-like Domain of HR23B., Fujiwara K, Tenno T, Sugasawa K, Jee JG, Ohki I, Kojima C, Tochio H, Hiroaki H, Hanaoka F, Shirakawa M, J Biol Chem 2004 Feb 6;279(6):4760-7. Epub 2003 Oct 29. PMID:14585839
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (752 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1UEL
  • Retrieve 1UEL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UEL from S2C, [Save to disk]
  • View 1UEL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UEL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UEL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uela_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1uelb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1uel from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uel_A] [1uel_B] [1uel]
  • SWISS-PROT database: [P55036] [P54727]
  • Domain organization of [PSMD4_HUMAN] [RD23B_HUMAN] by SWISSPFAM
  • Domains found in 1UEL: [UBQ] [UIM ] by SMART
  • Other resources with information on 1UEL
  • Community annotation for 1UEL at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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