1PAU Crystal structure of the complex of apopain with the tetrapeptide aldehyde inhibitor AC-DEVD-CHO date
authors Rotonda, J., Becker, J.W.
compound source
symmetry
R_factor
R_Free 0.2750000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand ACE, ASJ enzyme
note 1PAU (Molecule of the Month:pdb56)
related structures by homologous chain: 1RE1, 1RHU
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe three-dimensional structure of apopain/CPP32, a key mediator of apoptosis., Rotonda J, Nicholson DW, Fazil KM, Gallant M, Gareau Y, Labelle M, Peterson EP, Rasper DM, Ruel R, Vaillancourt JP, Thornberry NA, Becker JW, Nat Struct Biol 1996 Jul;3(7):619-25. PMID:8673606
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1pau.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (1pau.pdb2.gz) 145 Kb
  • Biological Unit Coordinates (1pau.pdb3.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 1PAU
  • CSU: Contacts of Structural Units for 1PAU
  • Likely Quarternary Molecular Structure file(s) for 1PAU
  • Structure Factors (98 Kb)
  • Retrieve 1PAU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PAU from S2C, [Save to disk]
  • Re-refined 1pau structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PAU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PAU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PAU, from MSDmotif at EBI
  • Genome occurence of 1PAU's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pau.1, region A:,B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pau_C] [1pau] [1pau_A] [1pau_B]
  • SWISS-PROT database: [P42574]
  • Domain organization of [CASP3_HUMAN] by SWISSPFAM
  • Domain found in 1PAU: [CASc ] by SMART
  • Other resources with information on 1PAU
  • Community annotation for 1PAU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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