1RE1 CRYSTAL STRUCTURE OF CASPASE-3 WITH A NICOTINIC ACID ALDEHYDE INHIBITOR date
authors Becker, J.W., Rotonda, J., Soisson, S.M.
compound source
symmetry
R_factor
R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand NA3 BindingDB enzyme
related structures by homologous chain: 1PAU, 1RHM
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceReducing the peptidyl features of caspase-3 inhibitors: a structural analysis., Becker JW, Rotonda J, Soisson SM, Aspiotis R, Bayly C, Francoeur S, Gallant M, Garcia-Calvo M, Giroux A, Grimm E, Han Y, McKay D, Nicholson DW, Peterson E, Renaud J, Roy S, Thornberry N, Zamboni R, J Med Chem 2004 May 6;47(10):2466-74. PMID:15115390
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1re1.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 1RE1
  • CSU: Contacts of Structural Units for 1RE1
  • Likely Quarternary Molecular Structure file(s) for 1RE1
  • Structure Factors (64 Kb)
  • Retrieve 1RE1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RE1 from S2C, [Save to disk]
  • Re-refined 1re1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1RE1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RE1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RE1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1re1.1, region A:,B [Jmol] [rasmolscript] [script source]
        - Domain d1e1re1, region E:358-474 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1re1] [1re1_A] [1re1_B]
  • SWISS-PROT database: [P42574]
  • Domain organization of [CASP3_HUMAN] by SWISSPFAM
  • Domain found in 1RE1: [CASc ] by SMART
    • Other resources with information on 1RE1
  • Community annotation for 1RE1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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