1RHM CRYSTAL STRUCTURE OF THE COMPLEX OF CASPASE-3 WITH A NICOTINIC ACID ALDEHYDE INHIBITOR date
authors Becker, J.W., Rotonda, J., Soisson, S.M.
compound source
symmetry
R_factor
R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand NA4 BindingDB enzyme
related structures by homologous chain: 1RE1, 1RHK
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceReducing the peptidyl features of caspase-3 inhibitors: a structural analysis., Becker JW, Rotonda J, Soisson SM, Aspiotis R, Bayly C, Francoeur S, Gallant M, Garcia-Calvo M, Giroux A, Grimm E, Han Y, McKay D, Nicholson DW, Peterson E, Renaud J, Roy S, Thornberry N, Zamboni R, J Med Chem 2004 May 6;47(10):2466-74. PMID:15115390
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (1rhm.pdb1.gz) 79 Kb
  • Biological Unit Coordinates (1rhm.pdb2.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 1RHM
  • CSU: Contacts of Structural Units for 1RHM
  • Likely Quarternary Molecular Structure file(s) for 1RHM
  • Structure Factors (123 Kb)
  • Retrieve 1RHM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RHM from S2C, [Save to disk]
  • Re-refined 1rhm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1RHM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RHM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RHM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rhm.1, region A:,B [Jmol] [rasmolscript] [script source]
        - Domain d1rhm.2, region C:,D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rhm_B] [1rhm] [1rhm_A] [1rhm_C] [1rhm_D]
  • SWISS-PROT database: [P42574]
  • Domain organization of [CASP3_HUMAN] by SWISSPFAM
  • Domain found in 1RHM: [CASc ] by SMART
    • Other resources with information on 1RHM
  • Community annotation for 1RHM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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