1PE0 Protein Binding date May 20, 2003
title Crystal Structure Of The K130r Mutant Of Human Dj-1
authors X.Tao, L.Tong
compound source
Molecule: Dj-1
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.191 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.706 78.173 63.819 90.00 108.88 90.00
method X-Ray Diffractionresolution 1.70 Å
related structures by homologous chain: 1PDV, 1PS4
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • transcription coactivator ac...
  • peroxiredoxin activity
  • glyoxalase (glycolic acid-fo...
  • synaptic transmission, dopam...
  • negative regulation of prote...
  • positive regulation of pepti...
  • dopamine uptake involved in ...
  • positive regulation of L-dop...

  • Primary referenceCrystal structure of human DJ-1, a protein associated with early onset Parkinson's disease., Tao X, Tong L, J Biol Chem 2003 Aug 15;278(33):31372-9. PMID:12761214
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (1pe0.pdb1.gz) 63 Kb
  • CSU: Contacts of Structural Units for 1PE0
  • Likely Quarternary Molecular Structure file(s) for 1PE0
  • Structure Factors (362 Kb)
  • Retrieve 1PE0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PE0 from S2C, [Save to disk]
  • Re-refined 1pe0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PE0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PE0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PE0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pe0a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pe0b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pe0_B] [1pe0] [1pe0_A]
  • SWISS-PROT database: [Q99497]
  • Domain organization of [PARK7_HUMAN] by SWISSPFAM
  • Other resources with information on 1PE0
  • Community annotation for 1PE0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science