1PHM Monooxygenase date Oct 10, 1997
title Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) From
authors S.T.Prigge, L.M.Amzel
compound source
Molecule: Peptidylglycine Alpha-Hydroxylating Monooxygenase
Chain: A
Synonym: Peptidylglycine Monooxygenase, Peptidylglycine 2- Hydroxylase, Phm;
Engineered: Yes
Other_details: Two Bound Coppers
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Cell_line: Dg44
Organ: Pituitary
Organelle: Secretory Granule
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Dg44
Expression_system_organ: Ovary
Expression_system_organelle: Secretory Vesicles
Expression_system_cellular_location: Excreted
Expression_system_vector_type: Virus
Expression_system_vector: Cytomegalovirus
Expression_system_plasmid: Pcis
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.261
length a length b length c angle alpha angle beta angle gamma
68.400 68.660 81.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand AZI, CU, GOL enzyme Oxidoreductase E.C. BRENDA
related structures by homologous chain: 1SDW, 3PHM

Primary referenceAmidation of bioactive peptides: the structure of peptidylglycine alpha-hydroxylating monooxygenase., Prigge ST, Kolhekar AS, Eipper BA, Mains RE, Amzel LM, Science 1997 Nov 14;278(5341):1300-5. PMID:9360928
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1phm.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 1PHM
  • CSU: Contacts of Structural Units for 1PHM
  • Likely Quarternary Molecular Structure file(s) for 1PHM
  • Retrieve 1PHM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PHM from S2C, [Save to disk]
  • View 1PHM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PHM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PHM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1phm_2, region 199-354 [Jmol] [rasmolscript] [script source]
        - Domain d1phm_1, region 45-198 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1phm] [1phm_A]
  • SWISS-PROT database: [P14925]
  • Domain organization of [AMD_RAT] by SWISSPFAM
  • Other resources with information on 1PHM
  • Community annotation for 1PHM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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